IntegromeDB integrates over 100 curated and publicly contributed
data sources and provides integrated view on the genomic, proteomic, transcriptomic, genetic and functional information currently available.
Information featured in the database includes gene function, orthologies, gene expression, pathways and
protein-protein interactions, mutations and SNPs, disease relationships,
related drugs and compounds.
| |
|
Examples:
|
Name/Synonym
|
External ID
|
Keywords
|
Wildcard/AND/OR
|
| |
IntegromeDB statistics
|
Category
|
Number of entities
|
Examples
|
|
|
|
|
|
Relations
|
197 616 248
|
Co-citation, co-expression
|
|
Physical interactions
|
56 882 654
|
Protein-protein, protein-DNA, ligand-protein, ...
|
|
Small molecules
|
9 957 879
|
Chemical molecules, ligands, compounds, glycans
|
|
Proteins
|
5 647 773
|
p53, NF-kappaB
|
|
Publications
|
3 189 964
|
PubMed
|
|
Interactions
|
2 750 297
|
Genetic interactions
|
|
Genes
|
2 546 676
|
TP53
|
|
Orthology groups
|
2 143 144
|
COGs
|
|
Sets
|
2 115 885
|
|
|
Biochemical reactions
|
1 715 618
|
Photosynthesis, respiration
|
|
Run of genes
|
372 937
|
Operon
|
|
Organisms
|
334 230
|
Homo sapiens
|
|
Pathways
|
150 582
|
KEGG
|
|
Experiments
|
45 125
|
Proteomics experiments
|
|
Protein molecular functions
|
8 570
|
protein kinase
|
|
Microarray experiments
|
5 971
|
NCBI GEO experiments
|
|
Cells
|
1 341
|
Pyramidal neurons
|
|
Grouping
|
1 011
|
Homology clusters
|
|
Other physical entities
|
831
|
Regulatory regions, promoters
|
|
Enzymes
|
766
|
glyoxalase I
|
|
Classes
|
47
|
gene, protein, regulatory region
|
|
Collections
|
26
|
|
|
Functional categories
|
25
|
Families, PFAM protein classification
|
|
|
|
|
|
Integrated databases
|
104
|
BIND, TRANSFAC
|
